Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs62054624 chr16:90103451 C/T 8.73E-9 176 25.87 20.2 6.62 KM Plot
PCPG rs62054638 chr16:89821131 G/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs62054639 chr16:89821489 C/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs62054640 chr16:89823157 C/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs62054642 chr16:89829427 G/A 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs62054643 chr16:89829455 A/G 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs62054644 chr16:89829835 C/G 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs62054659 chr16:90148397 C/G 8.74E-9 176 25.87 20.2 6.62 KM Plot
PCPG rs62056060 chr16:89900502 G/A 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs62056061 chr16:89901767 G/A 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs62056063 chr16:89903680 C/T 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs62056064 chr16:89903843 G/A 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs62056065 chr16:89905115 C/G 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs62056066 chr16:89906563 G/A 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs62056068 chr16:89909737 C/T 0.000182 173 25.87 23.37 36.37 KM Plot